PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g005170.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 528aa    MW: 57700.8 Da    PI: 4.9661
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g005170.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36401312102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d+++++++sws ++nsfvv+d+ efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Sopim08g005170.0.1  40 FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 121
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Sopim08g005170.0.1 122 LLKSISRRKP 131
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-4034124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3735129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-6536129IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3240129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-204063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEPNSYGSGK AAVGDGVGAP MLQTAPAPAP IPSANAPPPF LVKTYDMVDD PSTDKIVSWS  60
PTNNSFVVWD PPEFAKDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK  120
HLLKSISRRK PAHGHAQQQQ QPHGNAQQQM QPPGHSASVG ACVEVGKFGL EEEVERLKRD  180
KNVLMQELVR LRQQQQATDN QLQGMVQRLQ GMELRQQQMM SFLAKAVNRP GFLAQFVQQQ  240
NESNKRIAEG SKKRRIKQDI ESQDPSVTPA DGQIVKYQPG INEAAKAMLR ELSKLDSSPR  300
LDNFSNSPES FLIGDGSPQS NASSGRVSGV TLQEVPPTSG KPLLNTASAI AGQSLLPATS  360
EMQSSHLGTC SEIINNQLSN IIPLVGGEDL HPGSLSASDM IMPELSQLQG ILPENNTDVI  420
GCDSFMDTSA VEGKVGLDII GSCLSPGADI DWQSGLLDEI EEFPSVGDPF WEKFLQSPCS  480
PDAAMDDDIS NTSETKPQIN GWDKTQNMEH LTEQMGATNI KQQKHMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D7e-2991294129Heat shock factor protein 1
5d5v_B7e-2991294129Heat shock factor protein 1
5d5u_B7e-2991294129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256KKRRIK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX676000.0X67600.1 L.peruvianum Lp-hsf8 mRNA for heat stress transcription factor 8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296177.10.0heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLM1BII20.0M1BII2_SOLTU; Uncharacterized protein
STRINGSolyc08g005170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-138heat shock transcription factor A1D